SeWeR: Sequence Tools
Author: Malay

Select the program of choice. Paste your query in the query box. Click Submit button to pass on the query with default options. Please note that some programs might have some options/parameters that are required. Also note that SeWeR doesn't check whether the required option(s)/parameter(s) is supplied or not. See program description for details. Click Options button to fill up options. The button is a toggle. Clicking it again will close the option. Click Customize to customize this search. Fill up all the options that you require, then click Customize. SeWeR will open another window with a customized page. Save that file on your computer. Click Help to check the help page of the selected program. SeWeR will open a new window to show the help page. Click Submit to pass on the query. SeWeR will open a new window for results.
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readseq
Output format

cap
Remove bad 5' and 3' regions of each fragment Yes No | Trim the sequencing/cloning vector from each fragment Yes No
Assembly algorithm Cap 3 Cap2 - optimized for reads <= 450 bp Cap2 - optimized for reads > 450 bp | Results Interactively By email Address

ReadSeq |
At Baylor College of medicine. ReadSeq is written by Don Gilbert. It automatically recognizes the input sequence type and convert it into a format of choice. Input type-DNA/protein sequence(s)of different formats. Required option-output format.

CAP |
Contig assembly program (CAP). Input type-DNA sequences in FASTA format. Required option-none.

TOOLS Clean/Inverse Complement