blt fastx2tsv(1)

NAME

blt fastx-stats - Report basics statistics on a FASTA/FASTQ file

SYNOPSIS

blt fastx-stats file.fasta
blt fastx-stats file.fasta.xz
prog | blt fastx-stats

DESCRIPTION
blt fastx-stats reports basic statistics such as number of sequences, sequence lengths, base content, etc. on a FASTA or FASTQ file. Input files may be compressed with standard compression algorithms supported by xt_fopen(3), such as gzip, bzip2, and xz.

EXAMPLES
# Filter a FASTA file for sequences containing a pattern
blt fastx-stats file.fasta.xz

SEE ALSO
blt-fastx-derep(1), blt-fastq-derep.sh(1), blt-fastx2tsv(1)

AUTHOR
J. Bacon