SeWeR: Protein Sequence Analysis
Author: Malay

Select the program of choice. Paste your query in the query box. Click Submit button to pass on the query with default options. Please note that some programs might have some options/parameters that are required. Also note that SeWeR doesn't check whether the required option(s)/parameter(s) is supplied or not. See program description for details. Click Options button to fill up options. The button is a toggle. Clicking it again will close the option. Click Customize to customize this search. Fill up all the options that you require, then click Customize. SeWeR will open another window with a customized page. Save that file on your computer. Click Help to check the help page of the selected program. SeWeR will open a new window to show the help page. Click Submit to pass on the query. SeWeR will open a new window for results.
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entrez protein search
Search | exclude patents |
| From To Use the format YYYY/MM/DD; month and day are optional.

protparam
Enter a SWISS-PROT/TrEMBL accession number or a sequence identifier

psipred
E-Mail address
Short name of sequence
Prediction Method Predict Secondary Structure (PSIpred) Predict Transmembrane Topology (MEMSAT) Fold Recognition (GenTHREADER) Fold Recognition (GenTHREADER with multiple sequences)

scanprosite
SWISS-PROT/TrEMBL accession number or a sequence identifier
Exclude patterns with a high probability of occurrence

Entrez |
Search for a protein sequence using Enterz at NCBI server. Input type-key-words. Required option-none.

ProtParam |
Calculate different physico-chemical parameters of a protein sequence. Input type-protein sequence. Required option-none.

PSIPred |
Secondary structure Prediction. Winner of Critical Assessment of Protein Structure Prediction 1998 (CASP3). Correct upto 77%. Input type-protein sequence. Required option- email address.

ScanProsite |
Search for PROSITE pattern in your protein sequence. Input type-protein sequence. Required option-none.