=> Bootstrap dependency digest>=20010302: found digest-20190127
=> Checksum SHA1 OK for openbabel-2.3.2.tar.gz
=> Checksum RMD160 OK for openbabel-2.3.2.tar.gz
=> Checksum SHA512 OK for openbabel-2.3.2.tar.gz
===> Installing dependencies for openbabel-2.3.2nb8
==========================================================================
The supported build options for openbabel are:

	wx-gui

You can select which build options to use by setting PKG_DEFAULT_OPTIONS
or the following variable.  Its current value is shown:

	PKG_OPTIONS.openbabel (not defined)

==========================================================================
=> Tool dependency cmake>=2.8.1nb1: found cmake-3.14.5
=> Tool dependency pkgconf-[0-9]*: found pkgconf-1.6.0
=> Build dependency eigen>=2.0beta3: found eigen-2.0.17
=> Build dependency cwrappers>=20150314: found cwrappers-20180325
=> Full dependency libxml2>=2.8.0nb2: found libxml2-2.9.9
===> Overriding tools for openbabel-2.3.2nb8
===> Extracting for openbabel-2.3.2nb8
===> Patching for openbabel-2.3.2nb8
=> Applying pkgsrc patches for openbabel-2.3.2nb8
===> Creating toolchain wrappers for openbabel-2.3.2nb8
===> Configuring for openbabel-2.3.2nb8
=> Generating pkg-config files for builtin xz package.
=> Fixing CMAKE_MODULE_PATH in CMakeLists.txt
-- The C compiler identification is GNU 5.5.0
-- The CXX compiler identification is GNU 5.5.0
CMake Warning (dev) at /usr/pkg/share/cmake-3.14/Modules/Platform/NetBSD.cmake:15 (include):
  File /usr/pkg/share/cmake-3.14/Modules/Platform/NetBSD.cmake includes
  /tmp/pkgbuild/biology/openbabel/work.alpha/.buildlink/cmake-Modules/Platform/UnixPaths.cmake
  (found via CMAKE_MODULE_PATH) which shadows
  /usr/pkg/share/cmake-3.14/Modules/Platform/UnixPaths.cmake.  This may cause
  errors later on .

  Policy CMP0017 is not set: Prefer files from the CMake module directory
  when including from there.  Run "cmake --help-policy CMP0017" for policy
  details.  Use the cmake_policy command to set the policy and suppress this
  warning.
Call Stack (most recent call first):
  /usr/pkg/share/cmake-3.14/Modules/CMakeSystemSpecificInformation.cmake:26 (include)
  CMakeLists.txt:6 (project)
This warning is for project developers.  Use -Wno-dev to suppress it.

CMake Warning (dev) at /usr/pkg/share/cmake-3.14/Modules/Platform/NetBSD.cmake:15 (include):
  File /usr/pkg/share/cmake-3.14/Modules/Platform/NetBSD.cmake includes
  /tmp/pkgbuild/biology/openbabel/work.alpha/.buildlink/cmake-Modules/Platform/UnixPaths.cmake
  (found via CMAKE_MODULE_PATH) which shadows
  /usr/pkg/share/cmake-3.14/Modules/Platform/UnixPaths.cmake.  This may cause
  errors later on .

  Policy CMP0017 is not set: Prefer files from the CMake module directory
  when including from there.  Run "cmake --help-policy CMP0017" for policy
  details.  Use the cmake_policy command to set the policy and suppress this
  warning.
Call Stack (most recent call first):
  /usr/pkg/share/cmake-3.14/Modules/CMakeCInformation.cmake:66 (include)
  CMakeLists.txt:6 (project)
This warning is for project developers.  Use -Wno-dev to suppress it.

-- Check for working C compiler: /tmp/pkgbuild/biology/openbabel/work.alpha/.cwrapper/bin/gcc
-- Check for working C compiler: /tmp/pkgbuild/biology/openbabel/work.alpha/.cwrapper/bin/gcc -- works
-- Detecting C compiler ABI info
-- Detecting C compiler ABI info - done
-- Detecting C compile features
-- Detecting C compile features - done
CMake Warning (dev) at /usr/pkg/share/cmake-3.14/Modules/Platform/NetBSD.cmake:15 (include):
  File /usr/pkg/share/cmake-3.14/Modules/Platform/NetBSD.cmake includes
  /tmp/pkgbuild/biology/openbabel/work.alpha/.buildlink/cmake-Modules/Platform/UnixPaths.cmake
  (found via CMAKE_MODULE_PATH) which shadows
  /usr/pkg/share/cmake-3.14/Modules/Platform/UnixPaths.cmake.  This may cause
  errors later on .

  Policy CMP0017 is not set: Prefer files from the CMake module directory
  when including from there.  Run "cmake --help-policy CMP0017" for policy
  details.  Use the cmake_policy command to set the policy and suppress this
  warning.
Call Stack (most recent call first):
  /usr/pkg/share/cmake-3.14/Modules/CMakeCXXInformation.cmake:65 (include)
  CMakeLists.txt:6 (project)
This warning is for project developers.  Use -Wno-dev to suppress it.

-- Check for working CXX compiler: /tmp/pkgbuild/biology/openbabel/work.alpha/.cwrapper/bin/c++
-- Check for working CXX compiler: /tmp/pkgbuild/biology/openbabel/work.alpha/.cwrapper/bin/c++ -- works
-- Detecting CXX compiler ABI info
-- Detecting CXX compiler ABI info - done
-- Detecting CXX compile features
-- Detecting CXX compile features - done
CMake Deprecation Warning at CMakeLists.txt:16 (cmake_policy):
  The OLD behavior for policy CMP0005 will be removed from a future version
  of CMake.

  The cmake-policies(7) manual explains that the OLD behaviors of all
  policies are deprecated and that a policy should be set to OLD only under
  specific short-term circumstances.  Projects should be ported to the NEW
  behavior and not rely on setting a policy to OLD.


-- Using included inchi library.
-- Found LibXml2: /usr/pkg/lib/libxml2.so (found version "2.9.9") 
-- Found ZLIB: /lib/libz.so (found version "1.2.10") 
-- Could NOT find wxWidgets (missing: wxWidgets_LIBRARIES wxWidgets_INCLUDE_DIRS) 
-- Looking for conio.h
-- Looking for conio.h - not found
-- Looking for sys/time.h
-- Looking for sys/time.h - found
-- Looking for time.h
-- Looking for time.h - found
-- Looking for strings.h
-- Looking for strings.h - found
-- Looking for rpc/xdr.h
-- Looking for rpc/xdr.h - not found
-- Looking for regex.h
-- Looking for regex.h - found
-- Looking for C++ include sstream
-- Looking for C++ include sstream - found
-- Looking for rint
-- Looking for rint - not found
-- Looking for snprintf
-- Looking for snprintf - found
-- Looking for sranddev
-- Looking for sranddev - not found
-- Looking for strcasecmp
-- Looking for strcasecmp - found
-- Looking for strncasecmp
-- Looking for strncasecmp - found
-- Looking for dlopen in dl
-- Looking for dlopen in dl - not found
-- Looking for sys/types.h
-- Looking for sys/types.h - found
-- Looking for stdint.h
-- Looking for stdint.h - found
-- Looking for stddef.h
-- Looking for stddef.h - found
-- Check size of clock_t
-- Check size of clock_t - done
-- Performing Test SCANDIR_NEEDS_CONST
-- Performing Test SCANDIR_NEEDS_CONST - Failed
-- Performing Test HAVE_GCC_VISIBILITY
-- Performing Test HAVE_GCC_VISIBILITY - Success
-- Could NOT find Eigen3 (missing: EIGEN3_INCLUDE_DIR EIGEN3_VERSION_OK) (Required is at least version "2.91.0")
-- Found Eigen2: /tmp/pkgbuild/biology/openbabel/work.alpha/.buildlink/include/eigen2 (Required is at least version "2.0.0") 
-- Found PkgConfig: /tmp/pkgbuild/biology/openbabel/work.alpha/.tools/bin/pkg-config (found version "1.6.0") 
-- Checking for module 'cairo'
--   Package 'cairo', required by 'virtual:world', not found
-- Could NOT find Cairo. PNG output will NOT be supported.
-- Looking for getopt
-- Looking for getopt - found
-- GUI will not be built
CMake Warning (dev) at cmake/modules/UsePythonTest.cmake:54:
  Syntax Warning in cmake code at column 14

  Argument not separated from preceding token by whitespace.
Call Stack (most recent call first):
  test/CMakeLists.txt:171 (include)
This warning is for project developers.  Use -Wno-dev to suppress it.

CMake Warning (dev) at cmake/modules/UsePythonTest.cmake:54:
  Syntax Warning in cmake code at column 31

  Argument not separated from preceding token by whitespace.
Call Stack (most recent call first):
  test/CMakeLists.txt:171 (include)
This warning is for project developers.  Use -Wno-dev to suppress it.

CMake Warning (dev) at cmake/modules/UsePythonTest.cmake:57:
  Syntax Warning in cmake code at column 25

  Argument not separated from preceding token by whitespace.
Call Stack (most recent call first):
  test/CMakeLists.txt:171 (include)
This warning is for project developers.  Use -Wno-dev to suppress it.

CMake Warning (dev) at cmake/modules/UsePythonTest.cmake:57:
  Syntax Warning in cmake code at column 39

  Argument not separated from preceding token by whitespace.
Call Stack (most recent call first):
  test/CMakeLists.txt:171 (include)
This warning is for project developers.  Use -Wno-dev to suppress it.

-- Could NOT find PythonInterp (missing: PYTHON_EXECUTABLE) 
-- Configuring done
-- Generating done
CMake Warning:
  Manually-specified variables were not used by the project:

    CMAKE_INSTALL_LIBDIR


-- Build files have been written to: /tmp/pkgbuild/biology/openbabel/work.alpha/openbabel-2.3.2
=> Rewrite cmake Dependencies files